I'm wondering, in this AU, if Clark will indeed end up telling Lois his secret. I don't know if you've shown their attraction to be at that level, yet. So right now, I think Clark would have to become more smitten with Lois before he starts seriously considering telling her.
But there's definite attraction there. And if she does find out "early" (as compared to show canon), I'd be interested to see what she does with that information. Would she be good enough friends with Clark to keep it under her hat?
(And I forgot. Does Clark know he's an alien from Krypton in this fic at this point of his life? Or does he not know what is the cause of his unusual abilities?)
Anyway, if he does tell Lois, or if she figures it out or catches Clark in a slip somehow, what would she do? I think the Lois you've described right now would probably take the story to Perry White so she could win a Pulitzer. (Alien on Earth? Biggest story ever.) She's friends with Clark, but maybe not good enough friends to suppress a story of this magnitude....
(That of course brings up the reminder of the recently posted fic,
"From The Ruins" by Alisha Knight, recently posted to the Archive. Would your Lois print the story?